Resources

Code / software

Spyke

A Python application for visualizing, navigating, and spike sorting high-density multichannel extracellular neuronal waveform data (by Martin Spacek)
http://spyke.github.io/

Data

   

Teaching / seminars / workshops

 

Graduate School of Systemic Neurosciences (GSN)

The Vision Circuits Lab is a proud part of the GSN, 
Ludwig-Maximilians University (LMU) Munich
 

Lecture ‘Fundamentals in Neuroscience I’ (GSN, WS) and II (SS)

Foundations, Motor System, Neuroethology, Decision-making, Attention, Higher cognitive functions
 

Lecture ‘Hearing and Vision’ (GSN, SS)

Eye, Thalamus, Primary visual cortex, Extra-striate areas
 

Seminar ‘Current Topics in Neural Circuits of Vision’ (WS, SS)

Advanced seminar on issues of current interest in neural circuits of visual perception
 

Practical course ‘Psychophysics’ (GSN)
 

Practical course WP7 ‘Neurobiology’ (BSc)

Vision, Decision-making
 

Practical course ‘Analysis of multichannel extracellular recordings and optogenetic manipulations in the visual cortex of awake mice’

1 week recordings + optogenetics, 1 week data analysis
 

Practical course ‘Mouse Visual Behavior’
 

SciPyCourse

Introduction to Scientific Programming in Python
(taught by Martin Spacek)
https://scipycourse2019.github.io

External resources

DataJoint™ is a free, open-source framework for programming scientific databases and computational data pipelines, and used in the Vision Circuits Lab. 
https://datajoint.io

DokuWiki is a simple open-source wiki software that serves as our lab internal knowledge base.
https://www.dokuwiki.org/dokuwiki

Mattermost is an open-source, self-hostable online chat service with file sharing, search, and integrations that we use as an internal chat service.
https://mattermost.com/